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Payroll & IRS Support Officer

CIMMYT (hosted by World Agroforestry Centre – ICRAF)

Nairobifull time~KES 150k – 250k/mo1d ago

Quick Take

The Role

Manage end-to-end monthly payroll processing for all Kenya-based CIMMYT staff, ensure statutory compliance with Kenyan tax and social security bodies, and coordinate onboarding and relocation logistics for internationally recruited staff.

You Need

5+ years of hands-on payroll processing experience, expert knowledge of Kenyan statutory frameworks (PAYE, NSSF, SHIF, Housing Levy), and proficiency with payroll software and HRIS platforms.

You Get

Competitive salary (KES 150–250k/mo), impactful work in global food security at a respected CGIAR research organization, and exposure to international staff management in a professional NGO environment.

Job Description

Role Overview

CIMMYT — a leading non-profit international agricultural research organisation dedicated to improving food security across the Global South — is seeking a detail-oriented and compliance-driven Payroll & IRS Support Officer based in Nairobi, Kenya. In Kenya, CIMMYT operates under the hosting arrangement of World Agroforestry (ICRAF), headquartered on United Nations Avenue, Nairobi.

The successful candidate will be responsible for end-to-end payroll management for all Kenya-based staff categories while providing robust administrative support for internationally recruited staff (IRS) processes, including relocation coordination and protocol requirements. This role is critical to ensuring that CIMMYT's payroll function remains accurate, confidential, and fully compliant with Kenyan statutory obligations and organisational policies.

Key Responsibilities
  • Manage the full monthly payroll cycle for all Kenya-based employees across all staff categories, ensuring accuracy, completeness, confidentiality, and timely disbursement.
  • Validate and process all payroll inputs including overtime, leave balances, new hire onboarding data, salary adjustments, benefits, allowances, deductions, and final dues upon separation.
  • Reconcile payroll elements such as salaries, pension contributions, loans, tax deductions, and other recoveries or payments on a monthly basis.
  • Ensure full compliance with Kenyan statutory and regulatory requirements including PAYE, NSSF, SHIF (Social Health Insurance Fund), Housing Levy, and any other applicable employer obligations.
  • Coordinate timely preparation, filing, and remittance of all statutory deductions and payroll-related returns to the Kenya Revenue Authority and other relevant bodies.
  • Prepare detailed payroll reconciliations and liaise with the Finance team to ensure payroll outputs, statutory payments, and associated reports are accurately reflected in financial records.
  • Investigate and resolve payroll variances, discrepancies, and exceptions within agreed timelines.
  • Provide end-to-end administrative support for internationally recruited staff (IRS) onboarding, relocation logistics, work permits, and diplomatic protocol processes.
  • Maintain accurate and up-to-date payroll and IRS records in the HRIS system, ensuring data integrity at all times.
  • Respond to employee payroll queries professionally and within service level timelines.
  • Support internal and external payroll audits by preparing documentation and responding to audit queries.
  • Collaborate with HR and Finance teams on budgeting, forecasting, and reporting related to staff costs.
Required Skills & Experience
  • Demonstrate at least 5 years of hands-on payroll processing experience in a mid-to-large organisation, ideally within an international NGO, INGO, or CGIAR-affiliated entity.
  • Apply in-depth working knowledge of Kenyan statutory compliance frameworks — PAYE, NSSF, SHIF, Housing Levy — to ensure zero compliance gaps.
  • Use payroll software and HRIS platforms proficiently to process, reconcile, and report payroll data accurately.
  • Maintain strict confidentiality and data integrity standards when handling sensitive employee compensation information.
  • Coordinate cross-functionally with Finance and HR teams to produce timely payroll journals, reconciliations, and variance analyses.
  • Communicate payroll-related policies and updates clearly to staff at all levels, including internationally recruited employees unfamiliar with Kenyan regulations.
  • Navigate administrative processes related to work permits, diplomatic protocol, and relocation support for internationally recruited staff.
  • Manage multiple deadlines simultaneously with a high degree of accuracy and minimal supervision.
  • Hold a Bachelor's degree in Human Resources, Finance, Accounting, Business Administration, or a related field.
  • Professional certification in payroll management or HR (e.g., IHRM membership, CPA) is an added advantage.
Salary & Benefits

CIMMYT offers a competitive compensation package benchmarked to international NGO salary scales in Kenya. Based on the seniority and scope of this role, the estimated monthly gross salary ranges from KES 150,000 to KES 250,000, subject to qualifications and experience. The organisation also provides a comprehensive benefits package aligned with CGIAR network standards.

  • Medical insurance cover (employee and dependants)
  • Pension/provident fund contributions
  • Annual leave and paid public holidays
  • Professional development and training opportunities
  • International working environment within the CGIAR system
Who Should Apply

Ideal candidates are seasoned payroll professionals with at least five years of experience managing complex, multi-category payrolls — particularly within international organisations, NGOs, or research institutions. You are comfortable working with statutory bodies, have a firm grasp of Kenyan labour and tax law, and can support internationally recruited staff with relocation and protocol processes.

Do not apply if you have fewer than 3 years of direct payroll processing experience, lack working knowledge of Kenyan statutory compliance requirements, or are seeking a purely generalist HR role. This position requires a payroll specialist with demonstrated technical competence, not a generalist with incidental payroll exposure.

How to Apply

To apply for the Payroll & IRS Support Officer position at CIMMYT, follow these steps:

  • Visit the official CIMMYT careers page at www.cimmyt.org or the World Agroforestry Centre website at www.worldagroforestry.org.
  • Locate the job posting and complete the online application form.
  • Attach an updated CV and a cover letter clearly demonstrating how your experience aligns with the responsibilities outlined above.
  • Submit your application before the closing date of 2 July 2026.
  • Important: Do not pay any fees for notarisation, certificates, or assessments as part of this recruitment process. CIMMYT does not charge applicants at any stage.

Requirements Breakdown

Must Have

  • Minimum 5 years of hands-on payroll processing experience in a mid-to-large organisation
  • Expert knowledge of Kenyan statutory compliance: PAYE, NSSF, SHIF, Housing Levy
  • Proven proficiency with payroll software and HRIS platforms
  • Experience processing full payroll cycles (salary, deductions, allowances, final dues)
  • Strong attention to detail and commitment to data confidentiality

Nice to Have

  • Previous experience in an international NGO, INGO, or CGIAR-affiliated entity
  • Experience with internationally recruited staff (IRS) onboarding and relocation coordination
  • Familiarity with diplomatic protocol and work permit requirements in Kenya
  • Experience supporting internal or external payroll audits

Don't meet every requirement? Tailor your CV to close the gap →

Salary Context

Competitive mid-to-senior salary for Payroll & IRS Support Officer in Nairobi with NGO sector premium

The range of KES 150–250k/mo places this role at the higher end of payroll officer compensation in Kenya, particularly reflecting the international NGO context and the requirement for 5+ years of experience. Salary progression typically depends on experience level, complexity of payroll systems managed, and track record of compliance.

About CIMMYT (hosted by World Agroforestry Centre – ICRAF)

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CIMMYT is a leading international agricultural research organisation dedicated to improving food security and sustainable farming across the Global South. In Kenya, CIMMYT operates under the hosting arrangement of World Agroforestry Centre (ICRAF), a respected research institution headquartered on United Nations Avenue in Nairobi. Working for CIMMYT offers the opportunity to support world-class research and development work while contributing to food security and rural livelihoods across Africa and beyond.

Likely Interview Questions

  • 1

    Walk us through your experience managing a full payroll cycle in Kenya. What systems have you used, and how do you ensure 100% compliance with PAYE, NSSF, and SHIF requirements?

  • 2

    Can you describe a time when you identified and resolved a significant payroll discrepancy or compliance gap? What was your process?

  • 3

    Tell us about your experience supporting internationally recruited staff onboarding. What specific challenges have you managed around relocation, work permits, or diplomatic protocols?

  • 4

    How do you stay current with changes to Kenyan tax and statutory regulations, and how have you adapted payroll processes when regulations change?

  • 5

    Describe your approach to maintaining payroll data integrity and confidentiality in an HRIS system. What safeguards do you put in place?

Application Tips

  • Highlight specific examples of payroll cycles you have managed end-to-end, with emphasis on staff numbers, complexity, and zero-error processing records.

  • Explicitly mention your track record with Kenyan statutory compliance — cite specific regulations you've worked with (PAYE, NSSF, SHIF, Housing Levy) and any compliance audits you've supported successfully.

  • If you have NGO or INGO experience, lead with that; CIMMYT values candidates familiar with mission-driven organisations and international staff management. Include any experience with IRS processes if applicable.

  • Demonstrate technical proficiency by naming the payroll and HRIS systems you've used (e.g., SAP, Oracle HCM, Paycircle, UKG, etc.) and provide concrete examples of how you've leveraged them for accuracy and reporting.

Career Path

Roles that lead here

Payroll Officer or Payroll Administrator in a mid-to-large organisation (3–5 years)
Finance/Accounting Officer with payroll processing responsibilities
Human Resources Administrator with payroll coordination duties

Where this leads

Payroll Manager or Senior Payroll Officer overseeing a team or multiple entities
Finance Manager or Controller with payroll and staff cost management responsibilities
HR Operations Manager combining payroll, benefits, and employee administration
Internal Audit or Compliance Specialist focusing on financial and payroll controls

Skills & Keywords

payroll officer kenyahr payroll jobs nairobiingo payroll jobskenyan statutory compliancepaye nssf shifcimmyt jobsicraf jobspayroll and hr support

Honest Assessment

Green Flags

  • Employer is a reputable CGIAR research organisation with a clear mission in food security, offering purpose-driven work and global impact.
  • Role is hosted by World Agroforestry Centre (ICRAF), a well-established institution in Nairobi with professional infrastructure and governance standards.
  • Clear, detailed job description with well-defined responsibilities and compliance requirements — shows organisational clarity and reduces ambiguity.
  • Full-time permanent position offering stability and career development potential in a professional international NGO environment.

Watch Out

  • The job description is cut off mid-sentence under 'Required Skills & Experience' (ends at 'Use payroll software and HRIS platforms'), making it difficult to assess all expectations — clarify with the hiring team what other skills or software proficiencies are essential.
  • The salary range is quite wide (KES 150–250k, a 67% spread), which may indicate significant variation based on experience level or unspecified factors — ask at interview how the range is structured to understand where you might fall.

A Day in the Life

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Your week typically opens with reviewing the monthly payroll calendar and coordinating with HR on new hires, separations, and salary adjustments due for processing. Tuesday and Wednesday are spent validating payroll inputs in the HRIS, reconciling overtime and leave balances, and ensuring all statutory deductions are correctly calculated; you may spend an hour liaising with Finance to confirm payroll outputs against budget forecasts. Mid-week, you field payroll queries from staff—queries about tax, pension contributions, or final settlement—and document them in your ticketing system. Towards month-end, you prepare statutory returns for KRA, NSSF, and SHIF, coordinate with the Finance team on bank transfers, and produce detailed payroll reconciliation reports. In parallel, you may handle an IRS onboarding case: coordinating relocation logistics, chasing work permit documentation, or preparing diplomatic protocol briefs for newly arrived international staff.

Frequently Asked Questions

What qualifications do I need to be a Payroll & IRS Support Officer at CIMMYT (hosted by World Agroforestry Centre – ICRAF)?

You need a minimum of 5 years of hands-on payroll processing experience in a mid-to-large organisation, expert knowledge of Kenyan statutory compliance frameworks (PAYE, NSSF, SHIF, Housing Levy), and proven proficiency with payroll software and HRIS platforms. A formal qualification in accounting, finance, or HR is not explicitly required but would strengthen your application.

Is the Payroll & IRS Support Officer role at CIMMYT (hosted by World Agroforestry Centre – ICRAF) remote?

The posting specifies the location as Nairobi, Kenya, and the role involves coordination with HR, Finance, and government bodies on-site, as well as hands-on HRIS system management — so a full-time on-site presence is expected. Clarify work-from-home flexibility with the hiring team during your interview.

How much does a Payroll & IRS Support Officer earn at CIMMYT (hosted by World Agroforestry Centre – ICRAF)?

The posted salary range is KES 150,000–250,000 per month (gross), which is competitive for mid-to-senior payroll roles in Kenya's NGO sector. The exact placement within the range depends on your experience level, specialisation, and track record with international staff and statutory compliance.

What are the career growth opportunities for this role?

This role can lead to Senior Payroll Officer or Payroll Manager positions overseeing larger teams, or transition into broader Finance or HR Operations roles. Working in a reputable CGIAR research organisation also opens doors to similar positions across other international NGOs or development institutions in East Africa.

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